....nothing.... And then a nasty little *pop* sound from somewhere on the board..

I flipped it over to have a look, and I think possibly one of the resistor legs was touching one of the four LEDs. I moved it slightly, and then decided to have another go. This time, the first 8 step buttons illuminated, and with the mode selector in any of the pattern modes, LED6 was lit, along with LED 4. I tried moving the mode switch to init EEP and pressing 'start' and 'shift' bit nothing happens.
I unplugged to go get my camera, came back, plugged it back in and now only have the LEDs lit you can see in the picture. The mode switch still has the same function as before...

You may notice that I'm missing the tempo controller - when I got to that part of the assembly I found it was not in the bag with the two rotary encoders. Me being impatient, I decided to go ahead and test anyway, could this have caused this kind of malfunction?
I feel like I've blown something somewhere, but I have no idea where to start looking.
Any ideas?